农业图书情报学报 ›› 2023, Vol. 35 ›› Issue (5): 64-73.doi: 10.13998/j.cnki.issn1002-1248.23-0168

• 研究论文 • 上一篇    下一篇

农作物种质资源知识服务平台比较研究与启示

范可昕1, 孙坦2,4, 赵瑞雪1,3, 寇远涛1,3, 鲜国建1,4,*   

  1. 1.中国农业科学院农业信息研究所,北京 100081;
    2.中国农业科学院,北京 100081;
    3.国家新闻出版署 农业融合出版知识挖掘与知识服务重点实验室,北京 100081;
    4.农业农村部 农业大数据重点实验室,北京 100081
  • 收稿日期:2023-03-16 出版日期:2023-05-05 发布日期:2023-07-26
  • 通讯作者: * 鲜国建,博士,研究员,研究方向为大数据融汇治理与知识图谱。E-mail:xianguojian@caas.cn
  • 作者简介:范可昕,硕士研究生,研究方向为知识图谱。孙坦,博士,研究馆员(二级),研究方向为数字信息描述与组织。赵瑞雪,博士,研究员,研究方向为农业信息管理系统。寇远涛,博士,研究员,研究方向为数字图书馆
  • 基金资助:
    科技创新2030——新一代人工智能重大项目“农业智能知识服务平台研发与应用示范”(2021ZD0113705)

Comparison and Enlightenment of Crop Germplasm Resource Knowledge Service Platforms

FAN KeXin1, SUN Tan2,4, ZHAO RuiXue1,3, KOU YuanTao1,3, XIAN GuoJian1,4,*   

  1. 1. Agricultural Information Institute, Chinese Academy of Agricultural Sciences, Beijing 100081;
    2. The Chinese Academy of Agricultural Sciences, Beijing 100081;
    3. Key Laboratory of Knowledge Mining and Knowledge Services in Agricultural Converging Publishing, National Press and Publication Administration, Beijing 100081;
    4.Key Laboratory of Agricultural Big Data, Ministry of Agriculture and Rural Affairs, Beijing 100081
  • Received:2023-03-16 Online:2023-05-05 Published:2023-07-26

摘要: [目的/意义]种业是农业的芯片,国家对种业发展的重视度不断提高。面对海量的农作物种质资源的多源异构大数据,文章旨在提出一种如何有效地知识化组织和语义化关联,以满足用户不断增长的智能化知识服务需求的方法。[方法/过程]通过梳理国内外种质资源数据描述与组织,文章选择国际主流的4个种质资源知识服务平台,从基本概况、资源总量、知识类型、检索方式及结果5个视角进行对比分析,总结以上平台在文本挖掘、语义检索和知识计算等智能化服务方面的不足之处。[结果/结论]结合计算育种对种质资源知识服务提出的新需求,文章提出构建全景式农作物种质资源知识图谱并建设知识图谱驱动的种质资源知识服务平台,以期为面向计算育种的农作物种质资源知识服务平台研发提供借鉴。

关键词: 农作物, 种质资源, 计算育种, 知识服务, 知识图谱

Abstract: [Purpose/Significance] In recent years, challenges such as pandemics, wars, and natural disasters have posed numerous threats to China's food security. As the core of future agricultural productivity improvement, the importance of the seed industry has been continuously emphasized by the government. To facilitate preservation and utilization, scholars have integrated and digitized a vast amount of germplasm resources. However, the current platforms of crop germplasm resource knowledge services still suffer from issues such as diverse and fragmented large-scale heterogeneous data sources, lack of interconnection among data, and insufficient exploration of the data, thereby falling short of achieving intelligent and semantic research on germplasm resources. Therefore, this article aims to propose an effective method for knowledge organization and semantic association to meet the growing demand for intelligent knowledge services from users. The proposed method is to provide insights into the development of germplasm resource knowledge service platforms tailored for computational breeding. [Method/Process] This paper conducted a comparative analysis by examining the description and organization of germplasm resource data domestically and internationally. Four mainstream international platforms of germplasm resource knowledge services were selected for comparison from five perspectives: general overview, resource quantity, the types of knowledge, retrieval methods, and results. The deficiencies of these platforms in intelligent services such as text mining, semantic retrieval, and knowledge computation were summarized. In general, these platforms still rely on keyword-based retrieval as the primary means of searching, lacking systematic modeling of germplasm resource knowledge and the ability to achieve semantic retrieval in an intelligent environment. However, with the development of information technology in the era of big data, there is a growing demand in China to promote the development of computational breeding and provide more accurate, faster, and more intelligent knowledge resources to researchers and ordinary farmers through AI-based germplasm resource knowledge services. Therefore, in response to these new demands, the article proposes the construction of a panoramic crop germplasm resource knowledge graph and the development of a knowledge graph-driven germplasm resource knowledge service platform. [Results/Conclusions] The knowledge graph provides a more efficient and intelligent form of knowledge organization, and a knowledge service platform based on the knowledge graph contributes to improved efficiency and accuracy of knowledge services. In the next step, this research will focus on building a large-scale germplasm resource knowledge graph based on germplasm resource data and expanding it with other data, such as genotype, phenotype, environmental, and literature information. The application exploration will be conducted in scenarios such as intelligent question answering and knowledge-based computational breeding.

Key words: crops, germplasm resources, computational breeding, knowledge service, knowledge graph

中图分类号: 

  • G252

引用本文

范可昕, 孙坦, 赵瑞雪, 寇远涛, 鲜国建. 农作物种质资源知识服务平台比较研究与启示[J]. 农业图书情报学报, 2023, 35(5): 64-73.

FAN KeXin, SUN Tan, ZHAO RuiXue, KOU YuanTao, XIAN GuoJian. Comparison and Enlightenment of Crop Germplasm Resource Knowledge Service Platforms[J]. Journal of Library and Information Science in Agriculture, 2023, 35(5): 64-73.